PPDB

The Plant Proteome Database

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AT1G04940.1   translocon at the inner envelope membrane of chloroplasts 20

Lab Annot. Tic20-I (group 1) (part of 1 Mda TIC complex)
Mapman: 29.3.3 protein.targeting.chloroplast
Curated Location envelope-inner-integral (Pubmed: 23198870 21874592 21395885 23372012 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G04945.3 11Arabidopsis thaliana025599992 (2)C
AT4G03320.1 11Arabidopsis thaliana9E-5220842620 (0)C
AT2G47840.1 11Arabidopsis thaliana8E-061872642271 (255)C
Os07g38110.2 7Oryza sativa4E-5419644610 (0)C
Os07g38110.1 7Oryza sativa4E-5419644610 (0)C
Os02g40080.1 7Oryza sativa2E-5221041580 (0)M
GRMZM5G840946_P03 3.21Zea mays5E-5427338553 (3)C
GRMZM5G827186_P03 3.21Zea mays5E-5427338553 (3)C
Zm00001eb324670_P002 agpv5Zea mays5E-5427338550 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: TIC20(1)
TargetP: Chloroplast (Class 4 C0.520; M0.259; S0.001; _0.065)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 274 aa (-cTP 209)
Molecular Weight 31.20 kDA(-cTP 24.21)
PI 9.58(-cTP 8.96)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help