PPDB

PPDB	The Plant Proteome Database

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AT1G04680.1 Pectin lyase-like superfamily protein

Lab Annot.

Pectin lyase-like protein
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G13710.1 11 Arabidopsis thaliana 0 394 82 89 0 (0) S
AT4G13710.2 11 Arabidopsis thaliana 0 394 82 89 0 (0) S
AT3G07010.1 11 Arabidopsis thaliana 0 421 77 85 21 (11) S
Os04g05050.1 7 Oryza sativa 0 396 79 88 0 (0) S
Os04g05050.2 7 Oryza sativa 0 368 82 91 0 (0) _
Os10g31910.1 7 Oryza sativa 4E-178 347 66 80 0 (0) S
Zm00001eb420010_P002 agpv5 Zea mays 0 386 80 88 0 (0) C
v1_GRMZM2G412207_P02 4a53 Zea mays 0 369 82 90 0 (0) _
v1_GRMZM2G131912_P01 4a53 Zea mays 0 386 80 89 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) NosD(1) Pectate_lyase_4(1)
TargetP:	Secreted (Class 1 C0.050; M0.033; S0.929; _0.073)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	431 aa (-cTP 412)
Molecular Weight	47.77 kDA(-cTP )
PI	8.02(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2286	Detail								[A. thaliana]		Clp C1 WT
2291	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17432890(leaf total membranes)

Comparative Proteomics Data