PPDB

 The Plant Proteome Database

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AT1G04620.1   coenzyme F420 hydrogenase family / dehydrogenase%2C beta subunit family
Lab Annot. 7-hydroxymethyl chl a reductase (HMCR or HCAR)
Mapman: 19.50* tetrapyrrole synthesis.tetrapyrrole degradation
Curated Location plastid (Pubmed: 23198870 21934147 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os04g25400.2 7Oryza sativa030283920 (0)_
Zm00001eb038650_P001 agpv5Zea mays042380910 (0)C
GRMZM2G056686_P05 3.21Zea mays0423799116 (10)C
Zm00001eb038650_P002 agpv5Zea mays042379910 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FrhB_FdhB_C(1) FrhB_FdhB_N(1) Nup54_57_C(2)
TargetP: Chloroplast (Class 2 C0.759; M0.097; S0.104; _0.036)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 462 aa (-cTP 442)
Molecular Weight 51.66 kDA(-cTP 49.51)
PI 8.37(-cTP 8.19)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1123Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1617Detail        [A. thaliana] m48
1618Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1627Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopeWild-type
1628Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2288Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2311Detail       leaf [A. thaliana] PG plastoglobule 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 17216043(leaf)
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
21515685(GreenCut2)

Comparative Proteomics Data

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