PPDB

 The Plant Proteome Database

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AT1G04530.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. Tetratricopeptide repeat (TPR) protein
Mapman: 26.33* misc. tetratricopeptide repeat (TPR)
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G17940.1 11Arabidopsis thaliana2E-2311050660 (0)M
AT4G32340.1 11Arabidopsis thaliana7E-209651660 (0)M
AT5G20190.1 11Arabidopsis thaliana1E-1999456446 (0)C
Os03g04710.1 7Oryza sativa4E-2510849680 (0)C
Os10g42610.1 7Oryza sativa1E-239650700 (0)C
Os06g40440.1 7Oryza sativa1E-2210348650 (0)C
GRMZM2G702991_P01 3.21Zea mays3E-2921936480 (0)C
v1_GRMZM2G702991_P01 4a53Zea mays3E-2921936480 (0)C
GRMZM2G047002_P01 3.21Zea mays1E-2416339540 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BNIP2(1) Sel1(2) Spt5_N(1) TPR_1(3) TPR_12(2) TPR_14(3) TPR_15(3) TPR_16(3) TPR_
TargetP: Cytoplasm (Class 2 C0.163; M0.096; S0.175; _0.832)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 310 aa (-cTP 299)
Molecular Weight 34.55 kDA(-cTP )
PI 4.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1568Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2291Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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