PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G03880.1   cruciferin 2
Lab Annot. cruciferin 2
Mapman: 33.1 development.storage proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44120.3 11Arabidopsis thaliana04727283120 (80)S
AT5G44120.2 11Arabidopsis thaliana0368738440 (19)_
AT5G44120.1 11Arabidopsis thaliana1E-150285738434 (19)M
Os01g55690.1 7Oryza sativa2E-11846539614 (4)S
Os10g26060.1 7Oryza sativa4E-11647240590 (0)S
Os03g31360.1 7Oryza sativa2E-11247038572 (2)S
GRMZM2G174883_P01 3.21Zea mays5E-7641833520 (0)S
Zm00001eb267120_P002 agpv5Zea mays5E-7641833520 (0)S
v1_GRMZM2G174883_P01 4a53Zea mays5E-7641833520 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cupin_1(3) Cupin_2(2)
TargetP: Secreted (Class 1 C0.005; M0.049; S0.957; _0.063)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 455 aa (-cTP 419)
Molecular Weight 50.56 kDA(-cTP )
PI 6.53(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2210Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII st28
2238Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
15908592(Carbonylated seed protein)
17828791(total leaf)
17293592(total seedlings û light and dark grown)
18599647(seed proteome)
18814325(cotyledons)
19546170(mature pollen grains)
20118269(developing seeds)
19562800(oil body mature seeds (Brassica napus))
19334764(plasma membrane (cell culture))
20702726(mature seeds)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help