PPDB

 The Plant Proteome Database

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AT1G03750.1   switch 2
Lab Annot. CHR9/SNF2/SWI2 (chromatin remodeling 9); helicase
Mapman: 28.1 DNA.synthesis/chromatin structure
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G19210.3 11Arabidopsis thaliana1E-8058032500 (0)_
AT3G19210.1 11Arabidopsis thaliana1E-7958032500 (0)_
AT3G19210.2 11Arabidopsis thaliana3E-7858032490 (0)_
Os05g15890.1 7Oryza sativa082860740 (0)C
Os05g15890.2 7Oryza sativa055862770 (0)_
Os05g15890.3 7Oryza sativa3E-15139058730 (0)S
v1_GRMZM2G146041_P03 4a53Zea mays069763770 (0)_
GRMZM2G146041_P03 3.21Zea mays069763770 (0)_
v1_GRMZM2G146041_P02 4a53Zea mays061662750 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DEAD(1) ERCC3_RAD25_C(1) HDA2-3(1) Helicase_C(2) ResIII(1) SNF2_N(1) SWI2_SNF2(1
TargetP: Chloroplast (Class 2 C0.925; M0.131; S0.020; _0.088)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 862 aa (-cTP 838)
Molecular Weight 98.49 kDA(-cTP 95.85)
PI 6.53(-cTP 6.35)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
429Detail       leaf [A. thaliana]  
430Detail        [A. thaliana]  
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
641Detail        [A. thaliana] plastid nucleoid (crude) wild-type
1091Detail        [A. thaliana] R4Strep Complemented
1176Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1597Detail        [A. thaliana]  
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2221Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep

* For details about the exprimental sources click here.

Published Proteomics Data

 17432890(leaf total membranes)
19334764(plasma membrane (cell culture))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help