PPDB

PPDB	The Plant Proteome Database

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AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

SR1 (splicing factor 2); RNA binding
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

TAIR curated location: interchromatin granule & nuclear speck15686520,15133128,15034145

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G02840.2 11 Arabidopsis thaliana 0 266 100 100 4 (4) _
AT1G02840.3 11 Arabidopsis thaliana 0 266 100 100 4 (4) _
AT1G02840.5 11 Arabidopsis thaliana 0 266 100 100 0 (0) _
Os05g30140.1 7 Oryza sativa 4E-96 199 70 81 0 (0) M
Os05g30140.2 7 Oryza sativa 7E-95 199 70 81 0 (0) M
Os07g47630.1 7 Oryza sativa 7E-93 196 70 81 8 (8) M
Zm00001eb285560_P005 agpv5 Zea mays 2E-94 197 69 81 0 (0) _
Zm00001eb285560_P004 agpv5 Zea mays 2E-94 197 69 81 0 (0) _
GRMZM2G170365_P01 3.21 Zea mays 2E-94 197 69 81 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	PHM7_cyt(3) RRM_1(2) RRM_5(1) RRM_7(2) RRM_occluded(1) SRP-alpha_N(1)
TargetP:	Cytoplasm (Class 4 C0.044; M0.525; S0.026; _0.754)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	303 aa (-cTP 284)
Molecular Weight	33.73 kDA(-cTP )
PI	11.06(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data