PPDB

PPDB	The Plant Proteome Database

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AT1G02790.1 polygalacturonase 4

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G07830.1 11 Arabidopsis thaliana 9E-106 328 47 67 0 (0) S
AT5G48140.1 11 Arabidopsis thaliana 2E-101 326 44 66 0 (0) S
AT3G07820.1 11 Arabidopsis thaliana 1E-99 328 46 64 0 (0) S
Os06g40880.1 7 Oryza sativa 3E-96 366 42 60 0 (0) S
Os06g35320.1 7 Oryza sativa 3E-95 364 40 60 0 (0) S
Os06g35370.1 7 Oryza sativa 3E-95 364 40 60 0 (0) S
GRMZM2G153666_P02 3.21 Zea mays 9E-105 383 43 61 0 (0) S
Zm00001eb275910_P001 agpv5 Zea mays 9E-105 383 43 61 0 (0) S
v1_GRMZM2G153666_P02 4a53 Zea mays 9E-105 383 43 61 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Glyco_hydro_28(1) NosD(2) Pectate_lyase_3(2)
TargetP:	Secreted (Class 2 C0.010; M0.131; S0.741; _0.066)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	422 aa (-cTP 412)
Molecular Weight	44.43 kDA(-cTP )
PI	8.51(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
622	Detail								leaf [A. thaliana]	total leaf tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

16247729(mature Pollen)
19546170(mature pollen grains)
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data