PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G02640.1   beta-xylosidase 2
Lab Annot.
Mapman: 10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G49360.1 11Arabidopsis thaliana07706778200 (110)S
AT5G64570.1 11Arabidopsis thaliana07665569138 (78)M
AT5G09730.1 11Arabidopsis thaliana075854691 (1)S
Os11g44950.2 7Oryza sativa075262742 (2)M
Os04g54810.1 7Oryza sativa0735577073 (73)S
Os11g44950.1 7Oryza sativa065761734 (4)_
v1_GRMZM2G146192_P02 4a53Zea mays076960731 (1)S
Zm00001eb165230_P001 agpv5Zea mays076960730 (0)S
GRMZM2G146192_P01 3.21Zea mays076960735 (2)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Fn3-like(1) Glyco_hydro_3(1) Glyco_hydro_3_C(1) PEP_hydrolase(1)
TargetP: Secreted (Class 1 C0.017; M0.012; S0.979; _0.015)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 768 aa (-cTP 737)
Molecular Weight 82.98 kDA(-cTP )
PI 8.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 17526915(glycoproteome cell wall (stems))
18436743(specific to flower)
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help