PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G02335.1   germin-like protein subfamily 2 member 2 precursor
Lab Annot. cupin protein (GL22)
Mapman: 33.1 development.storage proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G62020.1 11Arabidopsis thaliana8E-112201768715 (13)S
AT3G62020.2 11Arabidopsis thaliana8E-100182768715 (13)_
AT1G09560.1 11Arabidopsis thaliana1E-92196637816 (15)S
Os05g19670.1 7Oryza sativa3E-9919869820 (0)S
Os01g14670.1 7Oryza sativa8E-9519768802 (2)S
Os01g72290.1 7Oryza sativa1E-8720161740 (0)S
GRMZM2G103512_P01 3.21Zea mays5E-89195637610 (10)S
Zm00001eb332460_P001 agpv5Zea mays5E-8919563760 (0)S
v1_GRMZM2G103512_P01 4a53Zea mays5E-89195637626 (26)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cupin_1(1) Cupin_2(1) Cupin_3(1) Cupin_7(1) MCR_alpha_N(1)
TargetP: Secreted (Class 1 C0.017; M0.013; S0.933; _0.113)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 219 aa (-cTP 146)
Molecular Weight 23.44 kDA(-cTP )
PI 8.73(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help