PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G02090.1 Proteasome component (PCI) domain protein

Lab Annot.

FUS5 (FUSCA 5); MAP kinase kinase
Mapman: 30.11.1 signalling.light.COP9 signalosome

Curated Location

TAIR curated location: signalosome complex11019806

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G02090.2 11 Arabidopsis thaliana 1E-165 223 100 100 22 (15) _
AT1G02090.3 11 Arabidopsis thaliana 4E-165 223 100 100 22 (15) _
Os07g30840.2 7 Oryza sativa 9E-119 261 65 79 25 (25) _
Os07g30840.1 7 Oryza sativa 2E-118 261 64 79 25 (25) _
Os07g30840.4 7 Oryza sativa 3E-101 224 66 80 25 (25) _
Zm00001eb321750_P004 agpv5 Zea mays 1E-119 260 64 78 0 (0) S
GRMZM2G085670_P05 3.21 Zea mays 1E-119 260 64 78 15 (8) S
v1_GRMZM2G085670_P05 4a53 Zea mays 1E-119 260 64 78 3 (3) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CSN7a_helixI(2) PCI(1)
TargetP:	Cytoplasm (Class 2 C0.094; M0.063; S0.128; _0.881)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	260 aa (-cTP 243)
Molecular Weight	29.47 kDA(-cTP )
PI	5.50(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1875	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2043	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2047	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2048	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2284	Detail								[A. thaliana]		Clp C1 WT
2285	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data