PPDB

The Plant Proteome Database

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AT1G01970.1   Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot. pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G19520.1 11Arabidopsis thaliana9E-6733837564 (4)M
AT5G04810.1 11Arabidopsis thaliana2E-19258244644 (39)C
AT5G04810.2 11Arabidopsis thaliana4E-1925824460 (0)C
Os07g46730.1 7Oryza sativa2E-11438046630 (0)C
Os07g46730.2 7Oryza sativa2E-11438046630 (0)C
Os02g39820.1 7Oryza sativa2E-5533933541 (1)M
GRMZM2G137064_P01 3.21Zea mays5E-11936649660 (0)C
v1_GRMZM2G137064_P01 4a53Zea mays5E-11936649660 (0)C
Zm00001eb329950_P001 agpv5Zea mays5E-11936649660 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PPR(7) PPR_1(4) PPR_2(6) PPR_3(4) PPR_long(2)
TargetP: Mitochondria (Class 5 C0.307; M0.416; S0.123; _0.009)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 409 aa (-cTP 359)
Molecular Weight 46.08 kDA(-cTP )
PI 6.58(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

20706207(cell cycle interactome (cell culture))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help