PPDB

The Plant Proteome Database

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AT1G01820.1   peroxin 11c

Lab Annot. PEX11C
Mapman: 35.1 not assigned.no ontology
Curated Location peroxisome (Pubmed: 16636080 17220199 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G45740.2 11Arabidopsis thaliana8E-1452328293100 (96)S
AT2G45740.1 11Arabidopsis thaliana8E-1452328293100 (96)S
AT2G45740.3 11Arabidopsis thaliana8E-1452328293100 (96)S
Os06g03660.2 7Oryza sativa1E-132233759014 (14)S
Os03g02590.4 7Oryza sativa9E-130229758938 (38)_
Os03g02590.2 7Oryza sativa9E-130229758938 (38)_
Zm00001eb269400_P001 agpv5Zea mays3E-13023074900 (0)S
Zm00001eb269400_P007 agpv5Zea mays3E-13023074900 (0)S
v1_GRMZM2G077837_P03 4a53Zea mays3E-13023074907 (7)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PEX11(1)
TargetP: Cytoplasm (Class 3 C0.012; M0.178; S0.210; _0.689)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 235 aa (-cTP 189)
Molecular Weight 25.91 kDA(-cTP )
PI 9.78(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1614Detail       Natural Senescence leaf [A. thaliana]  
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2247Detail       seedlings [A. thaliana] total tissue atg5
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

18931141(peroxisomes- high&low purity (cell culture))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19329564(peroxisomes (leaf))
21533090(plasmodesmata-crude)
21173025(root proteome)

Comparative Proteomics Data


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