PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G01260.1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Lab Annot.
Mapman: 27.3.6 RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G01260.3 11Arabidopsis thaliana05901001001 (1)_
AT1G01260.2 11Arabidopsis thaliana05901001001 (1)_
AT2G46510.1 11Arabidopsis thaliana5E-16661247610 (0)_
Os01g13460.1 7Oryza sativa4E-12562140560 (0)_
Os01g50940.1 7Oryza sativa1E-4128038530 (0)_
Os10g42430.1 7Oryza sativa1E-3821641582 (2)_
Zm00001eb339360_P001 agpv5Zea mays6E-12360941580 (0)_
Zm00001eb339360_P004 agpv5Zea mays6E-12360941580 (0)_
GRMZM2G076636_P02 3.21Zea mays6E-12360941580 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: bHLH-MYC_N(2) HLH(1) SUIM_assoc(2)
TargetP: Cytoplasm (Class 3 C0.111; M0.202; S0.096; _0.645)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 590 aa (-cTP 561)
Molecular Weight 66.00 kDA(-cTP )
PI 6.28(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help