PPDB

The Plant Proteome Database

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PPDB home page

Curated Location

Plastid (all) (1367)
Plastid envelope (143)
Outer envelope (30)
-integral (7)
-peripheral (0)
-cytosolic side (0)
Inner membrane space (1)
Inner envelope (81)
-integral (42)
-peripheral (14)
-stromal side (14)
Plastid Stroma (511)
Plastid Thylakoid (370)
-integral (138)
-peripheral (144)
-stromal side (76)
-lumenal side (68)
Plastid –plastoglobules (36)
plastid nucleoid (8)
plastid ribosome (75)
plastid -unspecified (287)
Mitochondria (177)
nucleus (51)
ER (3)
golgi (7)
vacuole (8)
peroxisome (67)
Cytosol (318)
plasma membrane (283)
cell wall (2)
Not plastid (32)
Other

Predicted Location

All plastid proteins (TargetP)
trans-membrane (TMHMM)
soluble (TMHMM)

Instructions

  • Click the red spots in the left panel to retrieve the list of genes.
  • To customize the output results, you can use the panel below to define the display columns

 

  1. outer envelope
  2. inner membrane space
  3. inner envelope
  4. stroma
  5. thylakoid
  6. plastoglobules
  7. plastid nucleoid (plastid chromosome)
  8. plastid 70S ribosome (30S + 50S)

Display options:
STD Annot.Lab Annot.Curated Loc.TAIR Loc.MapManBin
sep.MapManBinAramemnonTMHMMTargetPPredotar
PFAMCysCalc.gravyCalc.MWCalc.PI
exp.MW_dexp.pI_dexp.MW_nexp.pI_nexp.Volume
exp.ambiguityexp.amb_gmodelexp.relatedexp.MS_typeexp.MascotScore
exp.#peptidesexp.ID*exp.spotexp.queriesexp.uniq.queries
exp.adjusted.queriesexp.Tissueexp.Genotypeexp.Sep.StepsCellType
ProteomicsPub.GFP/YFP loc.Best AT hitBest Rice hitBest Maize hit
CoverageTop3pepTop3pep(-MetCys)#Tryptic Frag.#Tryptic Frag.(-ctp)
#Tryptic Frag.(-ltp)    

*exp.ID: Details of the experimental sources.

Output: 

Restrict species:

Species  Source of sequence: 

Extra options:

Experiments    Spots
(enter experiment IDs separated by space. Check the list if you do not know the IDs.)


©Klaas J. van Wijk Lab, Cornell University