PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink

 

PPDB home page

Curated Location

Plastid (all) (1243)
Plastid envelope (134)
Outer envelope (25)
-integral (6)
-peripheral (0)
-cytosolic side (0)
Inner membrane space (1)
Inner envelope (78)
-integral (40)
-peripheral (13)
-stromal side (13)
Plastid Stroma (485)
Plastid Thylakoid (343)
-integral (127)
-peripheral (134)
-stromal side (69)
-lumenal side (65)
Plastid –plastoglobules (36)
plastid nucleoid (7)
plastid ribosome (57)
plastid -unspecified (241)
Mitochondria (128)
nucleus (47)
ER (3)
golgi (2)
vacuole (8)
peroxisome (11)
Cytosol (275)
plasma membrane (10)
cell wall (2)
Not plastid (38)
Other

Predicted Location

All plastid proteins (TargetP)
trans-membrane (TMHMM)
soluble (TMHMM)

Instructions

  • Click the red spots in the left panel to retrieve the list of genes.
  • To customize the output results, you can use the panel below to define the display columns

 

  1. outer envelope
  2. inner membrane space
  3. inner envelope
  4. stroma
  5. thylakoid
  6. plastoglobules
  7. plastid nucleoid (plastid chromosome)
  8. plastid 70S ribosome (30S + 50S)

Display options:
STD Annot.Lab Annot.Curated Loc.TAIR Loc.MapManBin
sep.MapManBinAramemnonTMHMMTargetPPredotar
PFAMCysCalc.gravyCalc.MWCalc.PI
exp.MW_dexp.pI_dexp.MW_nexp.pI_nexp.Volume
exp.ambiguityexp.amb_gmodelexp.MS_typeexp.MascotScoreexp.#peptides
exp.ID*exp.Tissueexp.Genotypeexp.Sep.StepsCellType
ProteomicsPub.GFP/YFP loc.Best AT hitBest Rice hitBest Maize hit
#Tryptic Frag.#Tryptic Frag.(-ctp)#Tryptic Frag.(-ltp)

*exp.ID: Details of the experimental sources.

Output: 

Restrict species:

Species  Source of sequence: 


©Klaas J. van Wijk Lab, Cornell University