PPDB

PPDB	The Plant Proteome Database

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PPDB home page

Experimental Samples * (Browse by gel image list, click here.)

Instructions:

Select the source of samples by species, organ, cell type or subcellular fraction.
To customize the output results, you can use the panel below to define the display columns

Species & Organ	Cell type	Subcellular fraction
Arabidopsis thaliana-leaf Brassica rapa-root Brassica oleracea-petal Zea mays -leaf Bienertia sinuspersici	Mesophyll * Bundle Sheath *	Plastid Stroma Plastid Thylakoid
* All experimental data are from van Wijk lab unless indicated otherwisely. ** The Arabidopsis thaliana proteome was used for database searching *** Tip of leaf (fully differentiated plastids). For maize only.

Display options:

STD Annot. Lab Annot. Curated Loc. TAIR Loc. MapManBin
sep.MapManBin Aramemnon TMHMM TargetP Predotar
PFAM Cys Calc.gravy Calc.MW Calc.PI
exp.MW_d exp.pI_d exp.MW_n exp.pI_n exp.Volume
exp.ambiguity exp.amb_gmodel exp.related exp.MS_type exp.MascotScore
exp.#peptides exp.ID* exp.spot exp.queries exp.uniq.queries
exp.adjusted.queries exp.Tissue exp.Genotype exp.Sep.Steps CellType
ProteomicsPub. GFP/YFP loc. Best AT hit Best Rice hit Best Maize hit
Coverage Top3pep Top3pep(-MetCys) #Tryptic Frag. #Tryptic Frag.(-ctp)
#Tryptic Frag.(-ltp)

*exp.ID: Details of the experimental sources.

Output: webexcel file

Restrict species:

Species

Source of sequence:

Extra options:

Experiments Spots
(enter experiment IDs separated by space. Check the list if you do not know the IDs.)