PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

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Search Annotation: (annotation is only available for Arabidopsis genes)

Instructions:

Enter gene name or words in gene description, using * at the end of the search term as wildcard

To customize the output results, you can use the panel below to define the display columns

	If checked, search results will be restricted to proteins that are experimentally identified in van Wijk lab

Display options:

STD Annot. Lab Annot. Curated Loc. TAIR Loc. MapManBin
sep.MapManBin Aramemnon TMHMM TargetP Predotar
PFAM Cys Calc.gravy Calc.MW Calc.PI
exp.MW_d exp.pI_d exp.MW_n exp.pI_n exp.Volume
exp.ambiguity exp.amb_gmodel exp.MS_type exp.MascotScore exp.#peptides
exp.ID* exp.Tissue exp.Genotype exp.Sep.Steps CellType
ProteomicsPub. GFP/YFP loc. Best AT hit Best Rice hit Best Maize hit
#Tryptic Frag. #Tryptic Frag.(-ctp) #Tryptic Frag.(-ltp)

*exp.ID: Details of the experimental sources.

Output: webexcel file

Restrict species:

Species

Source of sequence:

Extra options:

Experiments Spots
(enter experiment IDs separated by space. Check the list if you do not know the IDs.)

©Klaas J. van Wijk Lab, Cornell University