PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

Enter a list of accessions

If checked, search results will be restricted to proteins that are experimentally identified in van Wijk lab

Instructions:

Enter one or multiple gene accession IDs. Enter one ID for each line. The valid accessions for Arabidopsis are TAIR AGI names (eg. At2g01130). The valid accessions for Maize are TIGR ZmGI (eg. TC218432 ) or AZM (eg.AZM4_1).
To customize the output results, you can use the panel below to define the display columns

Display options:

STD Annot. Lab Annot. Curated Loc. TAIR Loc. MapManBin
sep.MapManBin Aramemnon TMHMM TargetP Predotar
PFAM Cys Calc.gravy Calc.MW Calc.PI
exp.MW_d exp.pI_d exp.MW_n exp.pI_n exp.Volume
exp.ambiguity exp.amb_gmodel exp.related exp.MS_type exp.MascotScore
exp.#peptides exp.ID* exp.spot exp.queries exp.uniq.queries
exp.adjusted.queries exp.Tissue exp.Genotype exp.Sep.Steps CellType
ProteomicsPub. GFP/YFP loc. Best AT hit Best Rice hit Best Maize hit
Coverage Top3pep Top3pep(-MetCys) #Tryptic Frag. #Tryptic Frag.(-ctp)
#Tryptic Frag.(-ltp)

*exp.ID: Details of the experimental sources.

Output: webexcel file

Restrict species:

Species

Source of sequence:

Extra options:

Experiments Spots
(enter experiment IDs separated by space. Check the list if you do not know the IDs.)