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Browse MapMan Bins**:
Instructions:
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Click "+" button to expand a bin, click "-" button to shrink a bin
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The number next to the bin name is the number of gene models within a bin.
Click the number to retrieve genes
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To customize the output results, you can use the panel below to define the
display columns
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** The MapMan annotations are provided by Thimm et al. (Thimm O,
Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY,
Stitt M. (2004) MAPMAN: a user-driven tool to display genomics data sets onto
diagrams of metabolic pathways and other biological processes. Plant J. 37:914-39)
The bin assignment for a number of proteins were changed by the ''van Wijk lab'
based on experimental proteomics information, as well as information from
published literature. Also, a small number of additional Bins were created to
accommodate more precise functional assignment - These new Bins are marked with
an asterix (*).
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 1 PS (1313)
  1.1 PS.lightreaction (965)
1.2 PS.photorespiration (119)
1.3 PS.calvin cyle (229)
 1.4 PS.reductive PP (0)
2 major CHO metabolism (526)
2.1 major CHO metabolism.synthesis (201)
2.2 major CHO metabolism.degradation (325)
3 minor CHO metabolism (549)
3.1 minor CHO metabolism.raffinose family (59)
3.2 minor CHO metabolism.trehalose (83)
3.3 minor CHO metabolism.sugar alcohols (12)
3.4 minor CHO metabolism.myo-inositol (64)
3.5 minor CHO metabolism.others (241)
3.6 minor CHO metabolism.callose (35)
3.7 minor CHO metabolism.sugar kinases (8)
3.8 minor CHO metabolism.galactose (47)
4 glycolysis (442)
4.1 glycolysis.UGPase (27)
4.2 glycolysis.PGM (43)
4.3 glycolysis.G6PIsomerase (23)
4.4 glycolysis.PPFK (56)
4.5 glycolysis.pyrophosphate-fructose-6-P phosphotransferase (31)
4.6 glycolysis.Fruc2,6BisPase (10)
4.7 glycolysis.aldolase (18)
4.8 glycolysis.TPI (27)
4.9 glycolysis.glyceraldehyde 3-phosphate dehydrogenase (55)
4.10 glycolysis.phosphoglycerate kinase (14)
4.11 glycolysis.phosphoglycerate mutase (43)
4.12 glycolysis.enolase (24)
4.13 glycolysis.PK (33)
4.14 glycolysis.PEPCase (27)
4.99 glycolysis.unspecified (0)
5 fermentation (84)
5.1 fermentation.LDH (5)
5.2 fermentation.PDC (22)
5.3 fermentation.ADH (10)
5.10 fermentation.aldehyde dehydrogenase (47)
6 gluconeogenese/ glyoxylate cycle (47)
6.1 gluconeogenese/ glyoxylate cycle.citrate synthase (8)
6.2 gluconeogenese/ glyoxylate cycle.malate synthase (4)
6.3 gluconeogenesis.Malate DH (11)
6.4 gluconeogenese/ glyoxylate cycle.PEPCK (9)
6.5 gluconeogenese/ glyoxylate cycle.pyruvate dikinase (9)
6.9 gluconeogenese/ glyoxylate cycle.isocitrate lyase (3)
7 OPP (123)
7.1 OPP.oxidative PP (74)
7.2 OPP.non-reductive PP (37)
7.3 OPP.electron transfer (12)
8 TCA / org. transformation (450)
8.1 TCA / org. transformation.TCA (209)
8.2 TCA / org. transformation.other organic acid transformations (149)
8.3 TCA / org. transformation.carbonic anhydrases (92)
9 mitochondrial electron transport / ATP synthesis (563)
9.1 mitochondrial electron transport / ATP synthesis.NADH-DH (162)
9.2 mitochondrial electron transport / ATP synthesis.NADH-DH.type II (22)
9.3 mitochondrial electron transport / ATP synthesis.electron transfer flavoprotein (21)
9.4 mitochondrial electron transport / ATP synthesis.alternative oxidase (9)
9.5 mitochondrial electron transport / ATP synthesis.cytochrome c reductase (53)
9.6 mitochondrial electron transport / ATP synthesis.cytochrome c (47)
9.7 mitochondrial electron transport / ATP synthesis.cytochrome c oxidase (104)
9.8 mitochondrial electron transport / ATP synthesis.uncoupling protein (14)
9.9 mitochondrial electron transport / ATP synthesis.F1-ATPase (127)
9.99 mitochondrial electron transport / ATP synthesis.unspecified (4)
10 cell wall (1557)
10.1 cell wall.precursor synthesis (210)
10.2 cell wall.cellulose synthesis (182)
10.3 cell wall.hemicellulose synthesis (87)
10.4 cell wall.pectin synthesis (5)
10.5 cell wall.cell wall proteins (230)
10.6 cell wall.degradation (356)
10.7 cell wall.modification (298)
10.8 cell wall.pectin*esterases (181)
11 lipid metabolism (1611)
11.1 lipid metabolism.FA synthesis and FA elongation (471)
11.2 lipid metabolism.FA desaturation (46)
11.3 lipid metabolism.Phospholipid synthesis (213)
11.4 lipid metabolism.TAG synthesis (26)
11.5 lipid metabolism.glyceral metabolism (26)
11.6 lipid metabolism.lipid transfer proteins etc (44)
11.7 lipid metabolism.unassigned (1)
11.8 lipid metabolism.exotics (steroids, squalene etc) (272)
11.9 lipid metabolism.lipid degradation (447)
11.10 lipid metabolism.glycolipid synthesis (54)
12 N-metabolism (136)
12.1 N-metabolism.nitrate metabolism (22)
12.2 N-metabolism.ammonia metabolism (74)
12.3 N-metabolism.N-degradation (17)
12.4 N-metabolism.misc (22)
13 amino acid metabolism (1373)
13.1 amino acid metabolism.synthesis (962)
13.2 amino acid metabolism.degradation (395)
13.99 amino acid metabolism.misc (6)
14 S-assimilation (84)
14.1 S-assimilation.APS (19)
14.2 S-assimilation.APR (10)
14.3 S-assimilation.sulfite redox (5)
14.15 S-assimilation.AKN (28)
15 metal handling (220)
16 secondary metabolism (1514)
16.1 secondary metabolism.isoprenoids (465)
16.2 secondary metabolism.phenylpropanoids (433)
16.3 secondary metabolism.shikimate pathway (0)
16.4 secondary metabolism.N misc (88)
16.5 secondary metabolism.sulfur-containing (36)
16.7 secondary metabolism.wax (86)
16.8 secondary metabolism.flavonoids (339)
16.10 secondary metabolism.simple phenols (51)
16.99 secondary metabolism.unspecified (16)
17 hormone metabolism (1567)
17.1 hormone metabolism.abscisic acid (193)
17.2 hormone metabolism.auxin (473)
17.3 hormone metabolism.brassinosteroid (224)
17.4 hormone metabolism.cytokinin (95)
17.5 hormone metabolism.ethylene (287)
17.6 hormone metabolism.gibberelin (127)
17.7 hormone metabolism.jasmonate (131)
17.8 hormone metabolism.salicylic acid (37)
18 Co-factor and vitamine metabolism (237)
18.1 Co-factor and vitamine metabolism.molybdenum cofactor (19)
18.2 Co-factor and vitamine metabolism.thiamine (33)
18.3 Co-factor and vitamine metabolism.riboflavin (39)
18.4 Co-factor and vitamine metabolism.pantothenate (22)
18.5 Co-factor and vitamine metabolism.folate & vitamine K (32)
18.6 Co-factor and vitamine metabolism.biotin (14)
18.8 Co-factor and vitamine metabolism.ubiquinone (7)
18.9 Co-factor and vitamine metabolism.vitamin E (0)
18.10 Co-factor and vitamine metabolism.coenzyme M (0)
18.11 Co-factor and vitamine metabolism.lipoic acid (12)
18.13 Co-factor and vitamine metabolism.isochorismatase (5)
18.20* Co-factor and vitamine metabolism.vitamin b6 (12)
18.21* Co-factor and vitamine metabolism.NAD/NADP (12)
19 tetrapyrrole synthesis (263)
19.1 tetrapyrrole synthesis.glu-tRNA synthetase (16)
19.2 tetrapyrrole synthesis.glu-tRNA reductase (13)
19.3 tetrapyrrole synthesis.GSA (7)
19.4 tetrapyrrole synthesis.ALA dehydratase (10)
19.5 tetrapyrrole synthesis.porphobilinogen deaminase (12)
19.6 tetrapyrrole synthesis.uroporphyrinogen III synthase (3)
19.7 tetrapyrrole synthesis.uroporphyrinogen decarboxylase (27)
19.8 tetrapyrrole synthesis.coproporphyrinogen III oxidase (13)
19.9 tetrapyrrole synthesis.protoporphyrin IX oxidase (13)
19.10 tetrapyrrole synthesis.magnesium chelatase (23)
19.11 tetrapyrrole synthesis.magnesium protoporphyrin IX methyltransferase (7)
19.12 tetrapyrrole synthesis.magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (5)
19.13 tetrapyrrole synthesis.divinyl chlorophyllide-a 8-vinyl-reductase (4)
19.14 tetrapyrrole synthesis.protochlorophyllide reductase (22)
19.15 tetrapyrrole synthesis.chlorophyll synthase (4)
19.16 tetrapyrrole synthesis.chlorophyll b synthase (12)
19.20 tetrapyrrole synthesis.ferrochelatase (13)
19.21 tetrapyrrole synthesis.heme oxygenase (16)
19.30 tetrapyrrole synthesis.urogen III methylase (5)
19.32 tetrapyrrole synthesis.sirohydrochlorin ferrochelatase (1)
19.40 tetrapyrrole synthesis.regulation (11)
19.50* tetrapyrrole degradation (13)
19.99 tetrapyrrole synthesis.unspecified (13)
20 stress (2716)
20.1 stress.biotic (1289)
20.2 stress.abiotic (1395)
21 redox.regulation (930)
21.1 redox.thioredoxin (303)
21.2 redox.ascorbate and glutathione (299)
21.3 redox.heme (41)
21.4 redox.glutaredoxins (122)
21.5 redox.periredoxins (48)
21.6 redox.dismutases and catalases (99)
21.7 redox.misc (0)
21.99 redox.misc (16)
22 polyamine metabolism (73)
22.1 polyamine metabolism.synthesis (62)
22.2 polyamine metabolism.degradation (11)
23 nucleotide metabolism (680)
23.1 nucleotide metabolism.synthesis (172)
23.2 nucleotide metabolism.degradation (160)
23.3 nucleotide metabolism.salvage (87)
23.4 nucleotide metabolism.phosphotransfer and pyrophosphatases (209)
23.5 nucleotide metabolism.deoxynucleotide metabolism (46)
23.6 nucleotide metabolism.signalling (0)
24 Biodegradation of Xenobiotics (94)
24.1 Biodegradation of Xenobiotics.hydroxyacylglutathione hydrolase (20)
24.2 Biodegradation of Xenobiotics.lactoylglutathione lyase (59)
24.3 Biodegradation of Xenobiotics.3-hydroxybutyryl-CoA dehydrogenase (3)
25 C1-metabolism (141)
25.1 C1-metabolism.glycine hydroxymethyltransferase (22)
25.2 C1-metabolism.formate-tetrahydrofolate ligase (8)
25.3 C1-metabolism.dihydropteridine diphosphokinase (5)
25.4 C1-metabolism.5-formyltetrahydrofolate cyclo-ligase (7)
25.5 C1-metabolism.Methylenetetrahydrofolate dehydrogenase & Methenyltetrahydrofolate cyclohydrolase (21)
25.6 C1-metabolism.methylenetetrahydrofolate reductase (8)
25.7 C1-metabolism.GTP cyclohydrolase I (4)
25.8 C1-metabolism.tetrahydrofolate synthase (13)
25.9 C1-metabolism.dihydroneopterin aldolase (9)
25.10 C1-metabolism.formate dehydrogenase (13)
25.11 C1-metabolism.S-(hydroxymethyl)glutathione dehydrogenase & S-(hydroxymethyl)glutathione synthase (4)
26 misc (4622)
26.1 misc.misc2 (156)
26.2 misc.UDP glucosyl and glucoronyl transferases (535)
26.3 misc.gluco-, galacto- and mannosidases (319)
26.4 misc.beta 1,3 glucan hydrolases (163)
26.5 misc.acyl transferases (8)
26.6 misc.O- methyl transferases (64)
26.7 misc.oxidases - copper, flavone etc. (308)
26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases (160)
26.9 misc.glutathione S transferases (207)
26.10 misc.cytochrome P450 (525)
26.11 misc.alcohol dehydrogenases (55)
26.12 misc.peroxidases (289)
26.13 misc.acid and other phosphatases (254)
26.14 misc.oxygenases (0)
26.15 misc.carbonic anhydrases (0)
26.16 misc.myrosinases-lectin-jacalin (139)
26.17 misc.dynamin (59)
26.18 misc.invertase/pectin methylesterase inhibitor family protein (95)
26.19 misc.plastocyanin-like (93)
26.20 misc.ferredoxin-like (0)
26.21 misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (208)
26.22 misc.short chain dehydrogenase/reductase (SDR) (202)
26.23 misc.rhodanese (33)
26.24 misc.GCN5-related N-acetyltransferase (108)
26.25 misc.sulfotransferase (0)
26.26 misc.aminotransferases (9)
26.27 misc.calcineurin-like phosphoesterase family protein (27)
26.28 misc.GDSL-motif lipase (321)
26.29* misc. DnaJ domain with unknown function (40)
26.30 misc. other Ferredoxins and Rieske domain (23)
26.31* misc. fibrillins (48)
26.33* misc. tetratricopeptide repeat (TPR) unknown function (25)
26.54* misc. Pentapeptide repeat (PPR) unknown function (99)
26.55* misc.AAA domain (2)
26.56* misc.ABC1k family (48)
27 RNA (9846)
27.1 RNA.processing (1250)
27.2 RNA.transcription (371)
27.3 RNA.regulation of transcription (7504)
27.4 RNA.RNA binding (645)
27.5* RNA.DEAD/DEAH BOX helicase (54)
28 DNA (1908)
28.1 DNA.synthesis/chromatin structure (1199)
28.2 DNA.repair (304)
28.3* DNA.plastid nucleoid interacting (44)
28.5* DNA.DEAD BOX helicase (1)
28.99 DNA.unspecified (361)
29 protein (14276)
29.1 protein.aa activation (391)
29.2 protein.synthesis (3287)
29.3 protein.targeting (1107)
29.4 protein.postranslational modification (2724)
29.5 protein.degradation (6003)
29.6 protein.folding (492)
29.7 protein.glycosylation (114)
29.8 protein assembly and cofactor ligation (121)
29.9* protein. processing (13)
30 signalling (4010)
30.1 signalling.in sugar and nutrient physiology (101)
30.2 signalling.receptor kinases (1406)
30.3 signalling.calcium (823)
30.4 signalling.phosphinositides (152)
30.5 signalling.G-proteins (912)
30.6 signalling.MAP kinases (182)
30.7 signalling.14-3-3 proteins (91)
30.8 signalling.misc (32)
30.9 signalling.lipids (3)
30.10 signalling.phosphorelay (20)
30.11 signalling.light (270)
30.99 signalling.unspecified (7)
31 cell (2769)
33 development (2016)
33.1 development.storage proteins (85)
33.2 development.late embryogenesis abundant (70)
33.30 development.multitarget (8)
33.99 development.unspecified (1850)
34 transport (3437)
34.1 transport.p- and v-ATPases (214)
34.2 transporter.sugars (248)
34.3 transport.amino acids (261)
34.4 transport.nitrate (37)
34.5 transport.ammonium (23)
34.6 transport.sulphate (32)
34.7 transport.phosphate (61)
34.8 transport.metabolite transporters at the envelope membrane (157)
34.9 transport.metabolite transporters at the mitochondrial membrane (234)
34.10 transport.nucleotides (53)
34.11 transport.NDP-sugars at the ER (21)
34.12 transport.metal (283)
34.13 transport.peptides and oligopeptides (177)
34.14 transport.unspecified cations (131)
34.15 transport.potassium (166)
34.16 transport.ABC transporters and multidrug resistance systems (406)
34.17 transport.peroxisomes (0)
34.18 transport.unspecified anions (99)
34.19 transport.Major Intrinsic Proteins (144)
34.20 transport.porins (22)
34.21 transport.calcium (77)
34.22 transport.cyclic nucleotide or calcium regulated channels (48)
34.23 transport.protein transport mitochondrial membrane (TIM/TOM) (0)
34.30 transport.H+ transporting pyrophosphatase (18)
34.98 transporter.membrane system unknown (11)
34.99 transport.misc (486)
35 not assigned (27188)
35.1 not assigned.no ontology (10876)
35.2 not assigned.unknown (16334)
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