PPDB

The Plant Proteome Database

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AT5G65260.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RRM protein
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G10350.1 11Arabidopsis thaliana1E-13222184901 (1)_
AT5G10350.2 11Arabidopsis thaliana3E-12020683891 (1)_
AT5G51120.1 11Arabidopsis thaliana1E-85184698049 (19)_
Os02g52140.2 7Oryza sativa2E-103221708017 (17)_
Os02g52140.1 7Oryza sativa1E-101223697917 (17)_
Os06g11620.1 7Oryza sativa3E-87207677912 (12)_
Zm00001eb255450_P001 agpv5Zea mays2E-10422171810 (0)_
GRMZM5G862331_P04 3.21Zea mays2E-10422171819 (9)_
v1_GRMZM2G108919_P01 4a53Zea mays7E-9821969818 (8)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4140(2) FTA4(1) RRM_1(1) T2SSM(2)
TargetP: Cytoplasm (Class 2 C0.108; M0.114; S0.105; _0.912)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 220 aa (-cTP 211)
Molecular Weight 25.25 kDA(-cTP )
PI 4.98(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2217Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2262Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help