PPDB

The Plant Proteome Database

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AT5G59950.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RNA and export factor-binding protein, putative
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G59950.5 11Arabidopsis thaliana2E-175245999912 (12)C
AT5G59950.3 11Arabidopsis thaliana7E-174244999911 (11)_
AT5G59950.4 11Arabidopsis thaliana3E-13618810010011 (11)C
Os03g17010.1 7Oryza sativa6E-62282526323 (23)_
Os03g17010.3 7Oryza sativa1E-5522154660 (0)_
Os03g17010.2 7Oryza sativa1E-5522154660 (0)_
Zm00001eb012600_P001 agpv5Zea mays2E-6825553670 (0)_
v1_GRMZM2G157329_P01 4a53Zea mays2E-68255536737 (37)_
v1_GRMZM2G157329_P02 4a53Zea mays2E-68255536737 (37)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FoP_duplication(2) RRM_1(1)
TargetP: Chloroplast (Class 5 C0.749; M0.046; S0.014; _0.674)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 244 aa (-cTP 195)
Molecular Weight 25.76 kDA(-cTP 20.70)
PI 9.83(-cTP 9.07)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2151Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2284Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19329564(peroxisomes (leaf))
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data


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