PPDB

The Plant Proteome Database

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AT5G50640.1   CBS/octicosapeptide/phox/Bemp1 domain protein

Lab Annot. CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G50530.1 11Arabidopsis thaliana05481001001 (1)C
AT5G63490.1 11Arabidopsis thaliana055069830 (0)C
AT5G63490.2 11Arabidopsis thaliana055069830 (0)C
Os01g69900.1 7Oryza sativa044571864 (4)C
Os12g07190.1 7Oryza sativa0504547219 (19)C
Os11g06930.1 7Oryza sativa8E-17451250700 (0)C
GRMZM2G133621_P02 3.21Zea mays055263790 (0)C
v1_GRMZM2G133621_P02 4a53Zea mays055263790 (0)C
Zm00001eb364290_P001 agpv5Zea mays055263790 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CBS(4) DUF228(1) Gram_pos_anchor(1) PB1(1) SEN1_N(1)
TargetP: Chloroplast (Class 2 C0.856; M0.187; S0.001; _0.103)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 548 aa (-cTP 463)
Molecular Weight 59.81 kDA(-cTP 50.84)
PI 5.88(-cTP 5.19)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help