PPDB

The Plant Proteome Database

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AT5G24710.1   Transducin/WD40 repeat-like superfamily protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G47410.4 11Arabidopsis thaliana9E-0619128400 (0)M
Os01g46510.1 7Oryza sativa01390708025 (25)M
Os01g46510.2 7Oryza sativa01368718125 (25)M
Os01g46450.1 7Oryza sativa2E-145367830 (0)S
Zm00001eb359400_P001 agpv5Zea mays0124675850 (0)M
Zm00001eb158110_P001 agpv5Zea mays0133571810 (0)M
Zm00001eb359400_P002 agpv5Zea mays0100677870 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Coatomer_WDAD(3) SAT(1) WD40(4)
TargetP: Mitochondria (Class 3 C0.024; M0.840; S0.030; _0.324)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1377 aa (-cTP 1374)
Molecular Weight 148.07 kDA(-cTP )
PI 6.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1934Detail       leaf [A. thaliana] chloroplast wild-type
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2301Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19200160(flower-stage 12)
19546170(mature pollen grains)
20706207(contaminants cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


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