PPDB

PPDB	The Plant Proteome Database

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AT5G23880.1 cleavage and polyadenylation specificity factor 100

Lab Annot.

cleavage and polyadenylation specificity factor 100
Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G61010.1 11 Arabidopsis thaliana 2E-37 376 28 51 2 (0) _
AT1G61010.2 11 Arabidopsis thaliana 2E-37 376 28 51 2 (0) _
AT1G61010.4 11 Arabidopsis thaliana 2E-37 376 28 51 0 (0) _
Os09g39590.1 7 Oryza sativa 0 742 71 84 13 (13) _
Os09g23380.1 7 Oryza sativa 1E-36 360 28 46 0 (0) _
Os03g63590.1 7 Oryza sativa 6E-35 377 29 50 0 (0) C
v1_GRMZM2G036050_P04 4a53 Zea mays 0 741 70 84 7 (7) _
v1_GRMZM2G036050_P02 4a53 Zea mays 0 741 70 84 7 (7) _
v1_GRMZM2G036050_P01 4a53 Zea mays 0 741 70 84 7 (7) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta-Casp(1) CPSF100_C(2) Lactamase_B(1) Lactamase_B_2(1) Lactamase_B_6(1) RMMBL
TargetP:	Cytoplasm (Class 3 C0.025; M0.090; S0.292; _0.808)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	739 aa (-cTP 729)
Molecular Weight	82.14 kDA(-cTP )
PI	5.14(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2286	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data