PPDB

The Plant Proteome Database

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AT5G16240.1   Plant stearoyl-acyl-carrier-protein desaturase family protein

Lab Annot. Stearoyl-ACP Desaturase
Mapman: 11.1.15 lipid metabolism.FA synthesis and FA elongation.ACP desaturase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G02630.1 11Arabidopsis thaliana03998591165 (122)C
AT2G43710.2 11Arabidopsis thaliana03498089443 (323)C
AT2G43710.1 11Arabidopsis thaliana03498089431 (310)C
Os01g69080.1 7Oryza sativa0365768746 (46)M
Os04g31070.1 7Oryza sativa038273837 (7)C
Os01g65830.1 7Oryza sativa1E-17633868810 (0)M
Zm00001eb143300_P001 agpv5Zea mays035078880 (0)C
GRMZM5G852502_P01 3.21Zea mays03507888160 (154)C
v1_GRMZM2G064056_P01 4a53Zea mays03557888131 (131)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FA_desaturase_2(1) Rubrerythrin(2)
TargetP: Chloroplast (Class 3 C0.713; M0.183; S0.037; _0.080)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 394 aa (-cTP 357)
Molecular Weight 45.02 kDA(-cTP 40.95)
PI 6.09(-cTP 5.52)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
94Detail       root [B. rapa] plastid stroma 
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help