PPDB

The Plant Proteome Database

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AT5G14170.1   SWIB/MDM2 domain superfamily protein

Lab Annot. CHC1
Mapman: 27.3.44 RNA.regulation of transcription.Chromatin Remodeling Factors
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G01890.1 11Arabidopsis thaliana053367741 (1)C
Os04g31320.1 7Oryza sativa039675887 (7)M
Zm00001eb110350_P001 agpv5Zea mays039475870 (0)C
GRMZM2G052416_P01 3.21Zea mays039475873 (3)C
v1_GRMZM2G052416_P01 4a53Zea mays0394758721 (21)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: B1(1) SWIB(1) TFIIA(1) YEATS(2)
TargetP: Cytoplasm (Class 5 C0.520; M0.117; S0.006; _0.578)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 534 aa (-cTP 474)
Molecular Weight 59.27 kDA(-cTP )
PI 9.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2300Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
21693672(wound-regulated leaf proteome (wt))
21166475(cytosolic-fractions-crude)
20813957(SUMO proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help