PPDB

PPDB	The Plant Proteome Database

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AT5G13270.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

RARE1 - PPR protein - editing accD
Mapman: 27.1.5* RNA.processing.editing

Curated Location

plastid nucleoid (Pubmed: 23198870 19934379 19395655 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G49170.1 11 Arabidopsis thaliana 1E-160 707 36 57 0 (0) C
AT1G68930.2 11 Arabidopsis thaliana 1E-152 711 35 54 0 (0) _
AT1G68930.1 11 Arabidopsis thaliana 2E-152 711 35 54 0 (0) M
Os01g25270.1 7 Oryza sativa 1E-155 703 36 55 0 (0) M
Os09g07780.1 7 Oryza sativa 8E-155 703 36 55 0 (0) M
Os02g01610.1 7 Oryza sativa 2E-152 697 36 54 0 (0) _
Zm00001eb254360_P003 agpv5 Zea mays 8E-151 682 36 55 0 (0) C
Zm00001eb254360_P002 agpv5 Zea mays 8E-151 682 36 55 0 (0) C
Zm00001eb254360_P001 agpv5 Zea mays 8E-151 682 36 55 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(3) DUF4071(1) DYW_deaminase(1) PPR(12) PPR_1(11) PPR_2(10) PPR_3(9) PPR_lo
TargetP:	Chloroplast (Class 3 C0.702; M0.059; S0.035; _0.159)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	752 aa (-cTP 672)
Molecular Weight	84.26 kDA(-cTP 75.41)
PI	6.20(-cTP 5.93)

Experimental Evidence

Expand

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data