PPDB

The Plant Proteome Database

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AT5G11950.1   Putative lysine decarboxylase family protein

Lab Annot. Possible lysine decarboxylase
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G11950.3 11Arabidopsis thaliana1E-1602161001000 (0)_
AT5G11950.2 11Arabidopsis thaliana1E-16021610010023 (16)_
AT5G11950.4 11Arabidopsis thaliana6E-1181631001000 (0)M
Os01g51210.1 7Oryza sativa1E-10220170834 (4)M
Os02g41770.1 7Oryza sativa4E-10121164810 (0)_
Os10g33900.1 7Oryza sativa1E-9920267820 (0)M
GRMZM2G021406_P01 3.21Zea mays3E-10120070834 (4)_
Zm00001eb294370_P001 agpv5Zea mays3E-10120070830 (0)_
v1_GRMZM2G021406_P01 4a53Zea mays3E-10120070835 (5)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LDcluster4(1) Lysine_decarbox(1)
TargetP: Cytoplasm (Class 4 C0.033; M0.208; S0.087; _0.537)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 216 aa (-cTP 200)
Molecular Weight 23.83 kDA(-cTP )
PI 5.40(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
17216043(leaf)
19888209(80S polysomal fraction)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


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