PPDB

PPDB	The Plant Proteome Database

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AT4G39620.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

PPR5 - homologue of maize PPR5
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G39620.2 11 Arabidopsis thaliana 0 502 100 100 1 (1) C
AT1G74850.1 11 Arabidopsis thaliana 1E-50 398 27 50 164 (135) C
AT3G53170.3 11 Arabidopsis thaliana 3E-50 350 30 49 0 (0) C
Os02g51480.1 7 Oryza sativa 0 397 67 81 1 (1) C
Os06g07550.1 7 Oryza sativa 1E-47 413 28 47 0 (0) C
Os03g19650.3 7 Oryza sativa 2E-44 376 27 46 13 (13) C
GRMZM2G025409_P01 3.21 Zea mays 0 419 64 80 29 (29) C
v1_GRMZM2G025409_P01 4a53 Zea mays 0 419 64 80 19 (19) C
Zm00001eb194340_P001 agpv5 Zea mays 0 458 60 75 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ECSIT(4) PPR(11) PPR_1(9) PPR_2(9) PPR_3(9) PPR_long(3) TPR_12(1)
TargetP:	Chloroplast (Class 4 C0.734; M0.044; S0.016; _0.387)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	563 aa (-cTP 516)
Molecular Weight	65.30 kDA(-cTP 59.82)
PI	9.49(-cTP 9.42)

Experimental Evidence

Expand

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data