PPDB

 The Plant Proteome Database

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AT4G25890.1   60S acidic ribosomal protein family
Lab Annot. 60S acidic ribosomal protein family
Mapman: 29.2.1.2.2.83 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P3
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G57290.3 11Arabidopsis thaliana3E-361198290149 (95)_
AT5G57290.1 11Arabidopsis thaliana7E-351208090149 (95)_
AT5G57290.2 11Arabidopsis thaliana2E-29758294142 (93)_
Os01g13080.1 7Oryza sativa1E-2369638621 (21)_
Os06g48780.1 7Oryza sativa1E-1669658620 (20)_
Zm00001eb226990_P001 agpv5Zea mays8E-287167870 (0)_
v1_GRMZM2G077208_P01 4a53Zea mays8E-2871678778 (77)_
GRMZM2G077208_P02 3.21Zea mays8E-28716787124 (121)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Ribosomal_60s(1)
TargetP: Cytoplasm (Class 5 C0.275; M0.298; S0.013; _0.408)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 119 aa (-cTP 26)
Molecular Weight 11.85 kDA(-cTP )
PI 4.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1494Detail       leaf [A. thaliana]  
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2250Detail       seedlings [A. thaliana] total tissue atg5
2300Detail        [A. thaliana] Clp C1 TRAP
2398Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/35SRecA-GFP
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15734919(80S cytolic ribosomes)
17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19334764(plasma membrane (cell culture))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data

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