PPDB

 The Plant Proteome Database

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AT4G16830.1   Hyaluronan / mRNA binding family
Lab Annot. nuclear RNA-binding protein (RGGA)
Mapman: 27.4 RNA.RNA binding
Curated Location
TAIR curated location: nucleus & cytoplasm15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G16830.3 11Arabidopsis thaliana0339899211 (11)M
AT4G16830.2 11Arabidopsis thaliana6E-1492151001009 (9)S
AT4G17520.1 11Arabidopsis thaliana1E-86384496142 (24)_
Os01g52390.1 7Oryza sativa2E-50393445338 (38)_
Os01g41880.1 7Oryza sativa7E-4933847573 (3)_
Os05g45660.2 7Oryza sativa3E-43326475612 (12)_
Zm00001eb154690_P001 agpv5Zea mays6E-4522755660 (0)_
v1_GRMZM2G116282_P02 4a53Zea mays6E-45227556674 (72)_
GRMZM2G116282_P02 3.21Zea mays6E-45227556687 (86)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HABP4_PAI-RBP1(2) Smg8_Smg9(1) Stm1_N(2) V_ATPase_I(1)
TargetP: Cytoplasm (Class 4 C0.486; M0.019; S0.013; _0.853)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 355 aa (-cTP 301)
Molecular Weight 37.47 kDA(-cTP )
PI 7.68(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2237Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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