PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G04330.1   Chaperonin-like RbcX protein

Lab Annot. RBCX1 - needed for Rubisco assembly
Mapman: 29.8 protein.protein assembly and cofactor ligation; 1.3.20* PS.calvin cycle.biogenesis
Curated Location plastid stroma (Pubmed: 23198870 21922322 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G19855.1 11Arabidopsis thaliana1E-061373147110 (86)C
Os08g32930.1 7Oryza sativa1E-5913066820 (0)M
Os08g32930.2 7Oryza sativa5E-328663760 (0)M
Os03g59320.1 7Oryza sativa9E-0610933460 (0)C
Zm00001eb179210_P002 agpv5Zea mays1E-5613064790 (0)C
AC205376.4_FGP003 3.21Zea mays8E-3613351640 (0)C
v1_AC205376.4_FGP003 4a53Zea mays8E-3613351640 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RcbX(1)
TargetP: Chloroplast (Class 5 C0.455; M0.292; S0.016; _0.205)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 174 aa (-cTP 116)
Molecular Weight 20.20 kDA(-cTP 13.62)
PI 8.62(-cTP 6.09)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
541Detail       leaf [A. thaliana] stroma (FPLC) >1 MDa stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19888209(leaves)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help