PPDB

The Plant Proteome Database

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AT3G28640.1   Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot. Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G28660.1 11Arabidopsis thaliana050495980 (0)M
AT5G40405.2 11Arabidopsis thaliana1E-10150335550 (0)_
AT5G40405.1 11Arabidopsis thaliana1E-10150335552 (2)_
Os03g52475.1 7Oryza sativa4E-9427947690 (0)C
Os02g53050.1 7Oryza sativa3E-9342237580 (0)_
Os08g15090.1 7Oryza sativa5E-9233943640 (0)C
GRMZM2G130699_P01 3.21Zea mays1E-11636547670 (0)M
Zm00001eb266810_P001 agpv5Zea mays1E-11636547670 (0)M
v1_GRMZM2G130699_P01 4a53Zea mays1E-11636547670 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ATP13(4) DYW_deaminase(1) PPR(8) PPR_1(7) PPR_2(6) PPR_3(7) PPR_long(3) TPR_14(3
TargetP: Mitochondria (Class 4 C0.149; M0.513; S0.088; _0.043)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 504 aa (-cTP 484)
Molecular Weight 56.57 kDA(-cTP )
PI 6.68(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1622Detail        [A. thaliana] m48

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help