PPDB

PPDB	The Plant Proteome Database

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AT3G21540.1 transducin family protein / WD-40 repeat family protein

Lab Annot.

unknown protein
Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G16750.1 11 Arabidopsis thaliana 7E-21 316 24 46 3 (3) M
AT5G08390.1 11 Arabidopsis thaliana 2E-18 166 30 51 0 (0) M
AT1G61210.3 11 Arabidopsis thaliana 2E-18 189 29 50 0 (0) _
Os03g05720.1 7 Oryza sativa 0 941 59 76 0 (0) _
Os04g50660.1 7 Oryza sativa 1E-36 674 23 43 0 (0) M
Os01g57210.1 7 Oryza sativa 1E-20 206 26 51 0 (0) _
Zm00001eb004160_P003 agpv5 Zea mays 0 946 58 76 0 (0) _
AC209858.4_FGP002 3.21 Zea mays 0 946 58 76 1 (1) _
Zm00001eb004160_P004 agpv5 Zea mays 0 933 57 75 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(11) BBS2_Mid(4) eIF2A(2) Ge1_WD40(4) Med19(2) Nucleoporin_N(3) Nup16
TargetP:	Cytoplasm (Class 3 C0.086; M0.132; S0.021; _0.536)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	955 aa (-cTP 881)
Molecular Weight	106.06 kDA(-cTP )
PI	6.86(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1828	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Fluctuating light

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data