PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G09720.1   P-loop containing nucleoside triphosphate hydrolases superfamily protein

Lab Annot. DExD box RNA helicase (RH57)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G09720.2 11Arabidopsis thaliana05411001000 (0)_
AT5G63120.2 11Arabidopsis thaliana4E-7142634532 (1)M
AT2G47330.1 11Arabidopsis thaliana1E-6840834533 (2)M
Os07g45360.1 7Oryza sativa054662770 (0)M
Os03g19530.1 7Oryza sativa4E-7441436565 (5)M
Os01g10050.1 7Oryza sativa2E-6842134554 (4)M
GRMZM2G083580_P02 3.21Zea mays054059752 (2)_
Zm00001eb329450_P001 agpv5Zea mays054059750 (0)_
v1_GRMZM2G083580_P02 4a53Zea mays0540597519 (19)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DEAD(2) Helicase_C(1) ResIII(2) UTP25(2)
TargetP: Cytoplasm (Class 2 C0.125; M0.094; S0.093; _0.825)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 541 aa (-cTP 520)
Molecular Weight 60.92 kDA(-cTP )
PI 9.45(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
738Detail        [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help