PPDB

The Plant Proteome Database

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AT3G04090.1   small and basic intrinsic protein 1A

Lab Annot. small and basic intrinsic protein 1A
Mapman: 34.19.4 transport.Major Intrinsic Proteins.SIP
Curated Location
TAIR curated location: endoplasmic reticulum16223486
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G18290.1 11Arabidopsis thaliana4E-10824371810 (0)S
AT5G18290.2 11Arabidopsis thaliana4E-10824371810 (0)S
AT3G56950.1 11Arabidopsis thaliana4E-2524028460 (0)S
Os01g08660.1 7Oryza sativa2E-6321951690 (0)S
Os03g20410.1 7Oryza sativa1E-1923527480 (0)M
Os01g74450.1 7Oryza sativa9E-0910533546 (6)_
GRMZM2G060922_P01 3.21Zea mays9E-6921854730 (0)S
Zm00001eb349840_P001 agpv5Zea mays9E-6921854730 (0)S
v1_GRMZM2G060922_P01 4a53Zea mays9E-6921854730 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: MIP(1)
TargetP: Secreted (Class 2 C0.001; M0.024; S0.978; _0.310)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 6 TMs
TAT position:
Length 240 aa (-cTP 145)
Molecular Weight 25.71 kDA(-cTP )
PI 9.80(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data


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