PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G28290.1   P-loop containing nucleoside triphosphate hydrolases superfamily protein

Lab Annot. P-loop containing nucleoside triphosphate hydrolase
Mapman: 28.1 DNA.synthesis/chromatin structure
Curated Location
TAIR curated location: nucleus16640604
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G28290.5 11Arabidopsis thaliana0357599990 (0)_
AT2G28290.4 11Arabidopsis thaliana0357499990 (0)_
AT2G28290.3 11Arabidopsis thaliana03574999913 (11)_
Os05g05230.1 7Oryza sativa078242620 (0)C
Os02g02290.1 7Oryza sativa8E-138888365215 (15)C
Os05g05780.1 7Oryza sativa7E-12748648630 (0)_
Zm00001eb280740_P005 agpv5Zea mays0104671810 (0)C
Zm00001eb280740_P004 agpv5Zea mays0104671810 (0)_
Zm00001eb280740_P002 agpv5Zea mays0104671810 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DEAD(1) DEAD_2(1) DFF40(1) Helicase_C(1) HOOK_N(5) ResIII(1) SnAC(1) SNF2_N(1) T
TargetP: Cytoplasm (Class 2 C0.123; M0.078; S0.076; _0.841)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 3574 aa (-cTP 3536)
Molecular Weight 389.86 kDA(-cTP )
PI 4.76(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
2289Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15276459(epidermis)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
22060019(phosphoproteome - N-starved seedlings)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help