PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G22480.1   phosphofructokinase 5

Lab Annot. phosphofructokinase protein
Mapman: 4.4 glycolysis.PPFK
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G29220.1 11Arabidopsis thaliana4E-139380547132 (9)_
AT5G56630.1 11Arabidopsis thaliana2E-138455476568 (9)_
AT5G61580.1 11Arabidopsis thaliana2E-138380537137 (23)C
Os09g24910.2 7Oryza sativa053868800 (0)C
Os09g24910.1 7Oryza sativa056564760 (0)C
Os10g26570.1 7Oryza sativa049669830 (0)C
v1_GRMZM2G127717_P01 4a53Zea mays052867800 (0)C
v1_GRMZM2G127717_P02 4a53Zea mays052867800 (0)C
Zm00001eb099530_P005 agpv5Zea mays052867800 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PFK(1)
TargetP: Chloroplast (Class 1 C0.982; M0.011; S0.011; _0.094)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 537 aa (-cTP 485) (-lTP 438)
Molecular Weight 58.61 kDA(-cTP 53.11)(-lTP 47.77)
PI 6.81(-cTP 6.11)(-lTP 6.599)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
2076Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2083Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
20423899(chloroplast)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help