PPDB

The Plant Proteome Database

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AT2G06530.1   SNF7 family protein

Lab Annot. VPS2.1
Mapman: 27.3.71 RNA.regulation of transcription.SNF7
Curated Location not plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G06530.2 11Arabidopsis thaliana4E-1452041001000 (0)_
AT1G03950.1 11Arabidopsis thaliana6E-5522044650 (0)_
AT5G44560.1 11Arabidopsis thaliana6E-5122441630 (0)_
Os07g13270.1 7Oryza sativa2E-11722582900 (0)M
Os11g47710.1 7Oryza sativa3E-11422482860 (0)_
Os07g13270.2 7Oryza sativa2E-7616480890 (0)M
GRMZM2G431900_P01 3.21Zea mays6E-12722484921 (1)_
v1_GRMZM2G431900_P01 4a53Zea mays6E-12722484921 (1)_
Zm00001eb303830_P001 agpv5Zea mays6E-12722484920 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cas9_Topo(2) DUF2203(2) Expansin_C(1) HTH_6(1) MRP-L28(1) PspA_IM30(2) Seryl_tRN
TargetP: Cytoplasm (Class 3 C0.020; M0.379; S0.047; _0.842)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 225 aa (-cTP 213)
Molecular Weight 25.29 kDA(-cTP )
PI 5.54(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

16400686(floem_sap B. napa)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19106119(plasma membrane detergent resistent microdomains (DRM))
22010978(Endosomal-sorting-interactome-VPS2.2)
21173025(root proteome)

Comparative Proteomics Data


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