PPDB

 The Plant Proteome Database

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AT1G77440.1   20S proteasome beta subunit C2
Lab Annot. 20S proteasome beta subunit C (PBC2)
Mapman: 29.5.11.20.1* protein.degradation.ubiquitin.proteasome.20S
Curated Location cytosol

TAIR curated location: proteasome core complex (sensu Eukaryota)9373170,9611183
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G77440.2 11Arabidopsis thaliana6E-15320410010030 (24)S
AT1G21720.1 11Arabidopsis thaliana4E-1482049699132 (90)S
AT3G60820.1 11Arabidopsis thaliana9E-182172545233 (155)_
Os06g43570.1 7Oryza sativa2E-134204879439 (39)_
Os02g08520.1 7Oryza sativa3E-133204859414 (14)S
Os09g32800.1 7Oryza sativa4E-18215264342 (42)_
GRMZM2G045371_P02 3.21Zea mays2E-135204879466 (64)S
Zm00001eb275340_P001 agpv5Zea mays2E-13520487940 (0)S
Zm00001eb387100_P001 agpv5Zea mays1E-13420485940 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Proteasome(1)
TargetP: Secreted (Class 4 C0.050; M0.069; S0.703; _0.383)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 204 aa (-cTP 192)
Molecular Weight 22.76 kDA(-cTP )
PI 5.63(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
119Detail       root [B. rapa] plastid stroma 
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2013Detail       leaf [A. thaliana] total leaf tissue wt
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2193Detail        [A. thaliana] total soluble P3-strepII 26
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2252Detail       seedlings [A. thaliana] total tissue gfs9
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2287Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
20516081(tagged-26S proteasome-affinity)

Comparative Proteomics Data

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