PPDB

The Plant Proteome Database

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AT1G33680.1   KH domain-containing protein

Lab Annot. nucleic acid binding
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G10070.1 11Arabidopsis thaliana077154620 (0)_
AT5G04430.1 11Arabidopsis thaliana3E-151923251214 (113)_
AT5G50940.1 11Arabidopsis thaliana8E-149645600 (0)_
Os08g01930.1 7Oryza sativa1E-74580415130 (30)_
Os02g13130.1 7Oryza sativa8E-48274415936 (36)_
Os02g13130.2 7Oryza sativa8E-36167466820 (20)_
v1_GRMZM2G158153_P02 4a53Zea mays3E-82726384712 (12)_
Zm00001eb174080_P001 agpv5Zea mays3E-8272638470 (0)_
GRMZM2G158153_P02 3.21Zea mays3E-82726384720 (20)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: KH_1(3) KH_2(2) KH_4(2) KH_5(2)
TargetP: Cytoplasm (Class 2 C0.165; M0.129; S0.115; _0.867)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 763 aa (-cTP 756)
Molecular Weight 80.44 kDA(-cTP )
PI 4.71(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help