PPDB

PPDB	The Plant Proteome Database

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AT1G27595.1 symplekin

Lab Annot.

similar to ESP4 (ENHANCED SILENCING PHENOTYPE 4)
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G01400.2 11 Arabidopsis thaliana 2E-170 632 47 65 0 (0) _
AT5G01400.3 11 Arabidopsis thaliana 8E-169 632 47 65 0 (0) M
AT1G27595.2 11 Arabidopsis thaliana 5E-167 244 100 100 0 (0) S
Os01g49940.1 7 Oryza sativa 0 1290 44 61 2 (2) _
Os01g49940.2 7 Oryza sativa 0 1251 44 62 1 (1) _
Os07g49320.1 7 Oryza sativa 9E-165 614 47 64 2 (2) C
Zm00001eb155980_P004 agpv5 Zea mays 0 1290 42 59 0 (0) M
Zm00001eb155980_P001 agpv5 Zea mays 0 1247 42 60 0 (0) M
Zm00001eb155980_P003 agpv5 Zea mays 0 1161 43 60 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_lid_9(1) CRM1_C(2) DUF3453(1) Pheromone(1) Symplekin_C(1)
TargetP:	Secreted (Class 5 C0.226; M0.137; S0.289; _0.054)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1325 aa (-cTP 1320)
Molecular Weight	145.45 kDA(-cTP )
PI	5.96(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1596	Detail								[A. thaliana]
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS

* For details about the exprimental sources click here.

Published Proteomics Data

20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data