PPDB

The Plant Proteome Database

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AT1G20580.1   Small nuclear ribonucleoprotein family protein

Lab Annot. small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G76300.1 11Arabidopsis thaliana2E-6613281879 (9)_
AT5G27720.1 11Arabidopsis thaliana1E-1172366345 (21)_
AT4G02840.1 11Arabidopsis thaliana5E-0892275246 (33)_
Os02g01250.1 7Oryza sativa7E-6310283998 (8)_
Os03g13760.1 7Oryza sativa2E-6210282998 (8)_
Os03g13760.2 7Oryza sativa1E-2953831000 (0)_
Zm00001eb229320_P001 agpv5Zea mays2E-6711481950 (0)_
v1_GRMZM2G115176_P03 4a53Zea mays3E-67112829646 (46)_
GRMZM2G115176_P03 3.21Zea mays3E-67112829634 (34)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LSM(1)
TargetP: Cytoplasm (Class 2 C0.039; M0.108; S0.145; _0.838)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 131 aa (-cTP 110)
Molecular Weight 14.24 kDA(-cTP )
PI 10.28(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2296Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


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