PPDB

PPDB	The Plant Proteome Database

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AT1G18260.1 HCP-like superfamily protein

Lab Annot.

suppressor of lin-12-like protein-related / sel-1 protein-related
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G73570.1 11 Arabidopsis thaliana 0 671 76 84 0 (0) S
AT1G70590.1 11 Arabidopsis thaliana 2E-08 216 25 46 0 (0) C
Os03g15350.1 7 Oryza sativa 0 650 64 78 0 (0) M
Zm00001eb011300_P004 agpv5 Zea mays 0 599 63 77 0 (0) S
Zm00001eb398230_P002 agpv5 Zea mays 0 668 63 77 0 (0) S
v1_GRMZM2G372398_P01 4a53 Zea mays 0 665 63 77 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Sel1(8) TPR_1(4) TPR_11(3) TPR_12(3) TPR_14(2) TPR_16(4) TPR_19(2) TPR_2(6) TPR_
TargetP:	Secreted (Class 1 C0.005; M0.020; S0.991; _0.044)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	678 aa (-cTP 667)
Molecular Weight	75.94 kDA(-cTP )
PI	5.78(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(ER-LOPIT-callus)
17432890(leaf total membranes)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data