PPDB

The Plant Proteome Database

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AT1G16890.1   ubiquitin-conjugating enzyme 36

Lab Annot. ubiquitin-conjugating enzyme, E2
Mapman: 29.5.11.3 protein.degradation.ubiquitin.E2
Curated Location not plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G16890.2 11Arabidopsis thaliana1E-86120100100117 (70)_
AT1G16890.3 11Arabidopsis thaliana2E-861201001005 (3)_
AT1G78870.2 11Arabidopsis thaliana5E-861209910081 (40)_
Os01g48280.1 7Oryza sativa8E-85120979931 (31)_
Os01g48280.2 7Oryza sativa2E-5684961000 (0)S
Os09g12230.1 7Oryza sativa2E-4111754680 (0)_
Zm00001eb343590_P001 agpv5Zea mays1E-8412097980 (0)_
GRMZM2G015287_P01 3.21Zea mays1E-84120979873 (69)_
v1_GRMZM2G015287_P01 4a53Zea mays1E-84120979867 (66)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Prok-E2_B(1) RWD(1) UEV(1) UQ_con(1)
TargetP: Cytoplasm (Class 2 C0.038; M0.126; S0.060; _0.906)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 120 aa (-cTP 108)
Molecular Weight 13.63 kDA(-cTP )
PI 6.73(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
2286Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

17644812(plasma membrane - suspension cells)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19888209(80S polysomal fraction)
19888209(leaves)
19423572(leaf (wt and clpr2-1))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


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