PPDB

 The Plant Proteome Database

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AT1G10200.1   GATA type zinc finger transcription factor family protein
Lab Annot. WLIM1; transcription factor
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G10200.2 11Arabidopsis thaliana1E-105146991000 (0)_
AT2G39900.1 11Arabidopsis thaliana4E-71175587215 (13)_
AT3G55770.1 11Arabidopsis thaliana1E-6917558702 (0)_
Os12g32620.1 7Oryza sativa3E-11018780870 (0)_
Os06g13030.2 7Oryza sativa6E-71184587217 (17)_
Os06g13030.1 7Oryza sativa9E-71184587217 (17)_
GRMZM2G004959_P01 3.21Zea mays3E-10718379862 (2)_
Zm00001eb264630_P001 agpv5Zea mays3E-10718379860 (0)_
v1_GRMZM2G004959_P03 4a53Zea mays3E-10718379861 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cytochrom_C550(2) LIM(2) Metallothio_Pro(4) zf-3CxxC_2(3)
TargetP: Cytoplasm (Class 2 C0.038; M0.201; S0.109; _0.850)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 190 aa (-cTP 166)
Molecular Weight 21.04 kDA(-cTP )
PI 9.10(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2245Detail       seedlings [A. thaliana] total tissue wild-type
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2253Detail       seedlings [A. thaliana] total tissue atg5
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
21693672(wound-regulated leaf proteome (AOS mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help