PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G03890.1   RmlC-like cupins superfamily protein

Lab Annot. RmlC-like cupins protein
Mapman: 33.1 development.storage proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44120.3 11Arabidopsis thaliana2E-1474644665120 (80)S
AT1G03880.1 11Arabidopsis thaliana2E-137448476670 (45)S
AT5G44120.2 11Arabidopsis thaliana5E-113364476440 (19)_
Os02g15090.1 7Oryza sativa1E-10244336580 (0)S
Os02g14600.1 7Oryza sativa5E-10247734560 (0)S
Os01g55690.1 7Oryza sativa5E-10244135594 (4)S
GRMZM2G174883_P01 3.21Zea mays5E-6643231520 (0)S
Zm00001eb267120_P002 agpv5Zea mays5E-6643231520 (0)S
v1_GRMZM2G174883_P01 4a53Zea mays5E-6643231520 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cupin_1(3) Cupin_2(3)
TargetP: Secreted (Class 1 C0.002; M0.132; S0.961; _0.024)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 451 aa (-cTP 396)
Molecular Weight 49.67 kDA(-cTP )
PI 5.47(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2269Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
15908592(Carbonylated seed protein)
17828791(total leaf)
20118269(developing seeds)
20702726(mature seeds)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help